LINC00500

Across TCGA patient cohorts, LINC00500 RNA expression is significantly associated with the RNA expression of many other genes, with 3,966 significant associations in total. LGG shows the largest number of these associations.

The most reproducible LINC00500-associated genes across cancer lineages are LINC00499, PTPN22, and BTK. Each is linked with LINC00500 in more than 14 cancer types. Because this analysis shows association rather than direction, both LINC00500-to-partner and partner-to-LINC00500 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00500 versus LINC00499 in SKCM, with a Pearson correlation of 0.72.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00500→partner) and Y-score (partner→LINC00500) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	LINC00499 →	+1.193	+0.269	<.001	<.001	3	15
CESC	PTPN22 →	+0.531	+0.056	<.001	<.001	3	11
SKCM	BTK →	+0.583	+0.131	<.001	<.001	3	10
LGG	TESPA1 →	+1.188	+0.132	<.001	<.001	3	10
THCA	CD1E →	+0.875	+0.018	<.001	<.001	3	10
TGCT	IGSF6 →	+1.344	+0.071	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest of 3,966 associations by consensus.

LINC00500 vs LINC00499 — SKCM

Explore this scatter interactively →