LINC00404

Across TCGA patient cohorts, LINC00404 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,789 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC00404-associated proteins across cancer lineages are CMKLR1_T342, DBT, and AHNAK_S5099. Each is linked with LINC00404 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00404-to-partner and partner-to-LINC00404 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00404 versus CMKLR1_T342 in COAD, with a Pearson correlation of -0.67.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00404→partner) and Y-score (partner→LINC00404) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	CMKLR1_T342 →	-0.675	-0.324	.005	<.001	3	2
COAD	DBT →	+0.248	+0.196	.009	.006	3	2
GBM	AHNAK_S5099 →	-0.638	-1.132	<.001	<.001	3	2
GBM	ABHD10 →	+0.284	+1.076	<.001	<.001	3	2
GBM	FNBP1L_S295 →	+0.476	+1.044	.002	.002	3	2
GBM	FUS →	+0.322	+0.898	<.001	<.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,789 associations by consensus.

LINC00404 vs CMKLR1_T342 — COAD

Explore this scatter interactively →