LINC00398

Across TCGA patient cohorts, LINC00398 RNA expression is significantly associated with the protein abundance of many other proteins, with 11,941 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible LINC00398-associated proteins across cancer lineages are TMPO, TOX4, and VRK1. Each is linked with LINC00398 in more than 4 cancer types. Because this analysis shows association rather than direction, both LINC00398-to-partner and partner-to-LINC00398 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00398 versus TMPO in GBM, with a Pearson correlation of -0.37.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00398→partner) and Y-score (partner→LINC00398) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	TMPO →	-0.282	-0.362	<.001	<.001	3	5
BRCA	TOX4 →	-0.238	-0.542	.001	<.001	3	5
LSCC	VRK1 →	-0.496	-0.259	<.001	<.001	3	5
LSCC	ORC4 →	-0.252	-0.244	.001	<.001	3	5
LSCC	FANCI →	-0.510	-0.262	<.001	<.001	3	5
BRCA	LSM14B →	-0.336	-0.469	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 11,941 associations by consensus.

LINC00398 vs TMPO — GBM

Explore this scatter interactively →