LINC00396

Across TCGA patient cohorts, LINC00396 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,264 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC00396-associated GO terms across cancer lineages are Positive regulation of nervous system development, Regulation of CD8-positive, alpha-beta T cell activation, and Chaperone-mediated protein folding. Each is linked with LINC00396 in more than 8 cancer types. Because this analysis shows association rather than direction, both LINC00396-to-partner and partner-to-LINC00396 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Positive regulation of nervous system development grouped by LINC00396-low versus LINC00396-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00396→partner) and Y-score (partner→LINC00396) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Positive regulation of nervous system development →	+0.046	+0.120	<.001	<.001	3	9
STAD	Regulation of CD8-positive, alpha-beta T cell activation →	+0.078	+0.112	<.001	<.001	3	8
STAD	Chaperone-mediated protein folding →	+0.090	+0.148	<.001	<.001	3	8
STAD	Lymphocyte homeostasis →	+0.090	+0.111	<.001	<.001	3	8
STAD	Negative regulation of dephosphorylation →	+0.088	+0.081	<.001	.001	3	8
STAD	Regulation of lymphocyte differentiation →	+0.083	+0.190	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,264 associations by consensus.

Positive regulation of nervous system development by LINC00396 expression — STAD

Explore this box plot interactively →