LINC00396

RNA — tumor vs normal
Tumor vs NormalRNABox plot · TCGA cohorts

Across TCGA pan-cancer cohorts, LINC00396 RNA differs between tumor and matched normal tissue in 1 of 18 cancer types tested, making tumor–normal expression one of LINC00396’s most consistent transcriptional readouts.

The strongest signal is observed in head and neck squamous cell carcinoma (HNSC), where LINC00396 RNA is more highly expressed in tumor relative to normal tissue. In most cancer types LINC00396 is over-expressed in tumor.

HNSC are the cancer types where LINC00396 tumor–normal differential expression is most reproducible.

RNA tumor vs normal associations by lineage

Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in LINC00396 RNA (log2); positive values indicate higher expression in tumor. p-values are from the differential-expression test.
LineageGenderStageFold-changepSampling consensus
HNSCAllII,III,IV+0.027.0372view →
Pink = over-expressed in tumor, green = repressed in tumor. Showing the 1 strongest of 1 lineages.

LINC00396–HNSC

Tumor-vs-normal expression box plot for LINC00396 RNA in HNSC.

Open the HNSC breakdown →

Exploration