IGKV2OR22-3

associated omics data
immunoglobulin kappa variable 2/OR22-3 (pseudogene)Genealiases: IGKV2OR223 · IGKVP4

Q-omics provides the consensus-scored IGKV2OR22-3 profile across patient tissues and cancer cell-line models. IGKV2OR22-3 expression is associated with patient survival in 21 of 34 cancer types, with the highest sampling consensus in HNSC. Among the 18 cancer types available for tumor–normal comparison, IGKV2OR22-3 is differentially expressed in 8, with the highest sampling consensus in COAD. Additionally, IGKV2OR22-3 RNA expression shows 6,865 significant pathway-activity associations, with the highest sampling consensus in BRCA. Together, these results highlight HNSC, COAD, and BRCA as cancer lineages where IGKV2OR22-3 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes IGKV2OR22-3 survival associations across molecular data types. IGKV2OR22-3 RNA expression shows survival associations in the most cancer types (21). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
IGKV2OR22-3 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier21HNSC (144)view →
This table ranks reproducible IGKV2OR22-3 RNA expression–survival associations across cancer types. High IGKV2OR22-3 expression shows unfavorable associations in GBM, but favorable associations in HNSC, CESC, SKCM, BRCA and UCS. The HNSC Kaplan–Meier curve shows clear separation, with the low-expression group declining faster, consistent with the favorable association (log-rank p < 0.001). Together, the overview and detailed table identify HNSC as the clearest survival context for IGKV2OR22-3 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
HNSCDFSMedianII,III,IV0.7520.619<.001144view →
CESCOSMedianAll0.8820.711<.00190view →
SKCMOSMedianAll0.8690.696<.00178view →
BRCAOSMedianAll0.9750.949<.00169view →
GBMOSTertileAll0.2480.424.01027view →
UCSOSTertileII,III,IV0.6520.260.01924view →
Pink = unfavorable, green = favorable. all 21 lineages →

IGKV2OR22-3-HNSC (DFS)

Kaplan–Meier survival curve for IGKV2OR22-3 RNA expression in HNSC: high vs low expression groups.

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Tumor vs Normal expression

This table summarizes IGKV2OR22-3 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 8. The strongest signals are observed in COAD for RNA.
IGKV2OR22-3 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot8COAD (10)view →
This table ranks reproducible tumor–normal expression differences for IGKV2OR22-3. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. IGKV2OR22-3 shows lower tumor expression in COAD, BRCA, LIHC and STAD and higher tumor expression in LUAD and KIRC. The COAD box plot shows higher IGKV2OR22-3 RNA expression in normal versus tumor tissue (log2 FC = −1.527, t-test p < 0.001).
LineageGenderStageFold-changepSampling consensus
COADFemaleAll−1.527<.00110view →
BRCAFemaleAll−0.362.0026view →
LUADFemaleAll+1.120<.0015view →
KIRCAllAll+0.290<.0015view →
LIHCFemaleII,III,IV−0.085.0153view →
STADAllIV−3.943<.0012view →
Green = repressed in tumor. all 8 lineages →

IGKV2OR22-3-COAD

Tumor-vs-normal expression box plot for IGKV2OR22-3 in COAD.

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Cross-omics associations

This table shows molecular features associated with IGKV2OR22-3 in patient tissues and cancer cell lines. In patient samples, IGKV2OR22-3 shows the broadest associations at the RNA and protein expression levels, with BRCA recurring as the lineage with the largest associated feature set.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
Function (RNA)6,865BRCA (3799)view →
RNA5,952TGCT (2055)view →