IGKV1OR2-9

associated omics data
immunoglobulin kappa variable 1/OR2-9 (pseudogene)Genealiases: IGKV1/OR2-9 · IGKV1OR29

Q-omics provides the consensus-scored IGKV1OR2-9 profile across patient tissues and cancer cell-line models. IGKV1OR2-9 expression is associated with patient survival in 18 of 34 cancer types, with the highest sampling consensus in HNSC. Among the 18 cancer types available for tumor–normal comparison, IGKV1OR2-9 is differentially expressed in 7, with the highest sampling consensus in COAD. Additionally, IGKV1OR2-9 RNA expression shows 6,838 significant pathway-activity associations, with the highest sampling consensus in HNSC. Together, these results highlight HNSC, and COAD as cancer lineages where IGKV1OR2-9 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes IGKV1OR2-9 survival associations across molecular data types. IGKV1OR2-9 RNA expression shows survival associations in the most cancer types (18). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
IGKV1OR2-9 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier18HNSC (144)view →
This table ranks reproducible IGKV1OR2-9 RNA expression–survival associations across cancer types. High IGKV1OR2-9 expression shows unfavorable associations in UVM, but favorable associations in HNSC, CESC, LIHC, CHOL and SKCM. The HNSC Kaplan–Meier curve shows clear separation, with the low-expression group declining faster, consistent with the favorable association (log-rank p < 0.001). Together, the overview and detailed table identify HNSC as the clearest survival context for IGKV1OR2-9 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
HNSCDFSMedianAll0.6760.546<.001144view →
UVMOSTertileII,III,IV0.1890.728.00272view →
CESCOSMedianAll0.8730.741.00352view →
LIHCDFSTertileAll0.7280.515.00445view →
CHOLDFSTertileAll0.7820.299.01627view →
SKCMDFSQuartileIII,IV0.6730.452.00226view →
Pink = unfavorable, green = favorable. all 18 lineages →

IGKV1OR2-9-HNSC (DFS)

Kaplan–Meier survival curve for IGKV1OR2-9 RNA expression in HNSC: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes IGKV1OR2-9 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 7. The strongest signals are observed in COAD for RNA.
IGKV1OR2-9 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot7COAD (10)view →
This table ranks reproducible tumor–normal expression differences for IGKV1OR2-9. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. IGKV1OR2-9 shows lower tumor expression in COAD, STAD, BRCA and READ and higher tumor expression in LUAD and KIRC. The COAD box plot shows higher IGKV1OR2-9 RNA expression in normal versus tumor tissue (log2 FC = −1.105, t-test p < 0.001).
LineageGenderStageFold-changepSampling consensus
COADFemaleAll−1.105<.00110view →
LUADFemaleAll+0.714<.0017view →
KIRCAllAll+0.152.0076view →
STADAllAll−0.863.0284view →
BRCAFemaleII,III,IV−0.205.0014view →
READAllAll−0.922.0032view →
Green = repressed in tumor. all 7 lineages →

IGKV1OR2-9-COAD

Tumor-vs-normal expression box plot for IGKV1OR2-9 in COAD.

Explore this plot interactively →

Cross-omics associations

This table shows molecular features associated with IGKV1OR2-9 in patient tissues and cancer cell lines. In patient samples, IGKV1OR2-9 shows the broadest associations at the RNA and protein expression levels, with HNSC recurring as the lineage with the largest associated feature set.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
Function (RNA)6,838HNSC (3381)view →
RNA6,307TGCT (2279)view →