IGHV3-38

RNA — tumor vs normal
Tumor vs NormalRNABox plot · TCGA cohorts

Across TCGA pan-cancer cohorts, IGHV3-38 RNA differs between tumor and matched normal tissue in 9 of 18 cancer types tested, making tumor–normal expression one of IGHV3-38’s most consistent transcriptional readouts.

The strongest signal is observed in colon adenocarcinoma (COAD), where IGHV3-38 RNA is repressed in tumor relative to normal tissue. In most cancer types IGHV3-38 is over-expressed in tumor, although a few such as COAD and READ show the opposite, repressed pattern.

COAD, LUAD, and KIRC are the cancer types where IGHV3-38 tumor–normal differential expression is most reproducible.

RNA tumor vs normal associations by lineage

Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in IGHV3-38 RNA (log2); positive values indicate higher expression in tumor. p-values are from the differential-expression test.
LineageGenderStageFold-changepSampling consensus
COADFemaleIII,IV−2.956<.00111view →
LUADAllIII,IV+1.543<.0019view →
KIRCMaleAll+0.562<.0017view →
READAllAll−2.188<.0015view →
BRCAFemaleAll−0.427.0014view →
LIHCMaleAll−0.299.0073view →
STADMaleIV−2.219.0342view →
LUSCAllAll+0.481.0341view →
THCAFemaleIII,IV−0.377.0421view →
Pink = over-expressed in tumor, green = repressed in tumor. Showing the 9 strongest of 9 lineages.

Exploration