HOXC9

Across TCGA patient cohorts, HOXC9 RNA expression is significantly associated with the RNA expression of many other genes, with 13,306 significant associations in total. ACC shows the largest number of these associations.

The most reproducible HOXC9-associated genes across cancer lineages are HOXC10, HOXC8, and HOXC6. Each is linked with HOXC9 in more than 32 cancer types. Because this analysis shows association rather than direction, both HOXC9-to-partner and partner-to-HOXC9 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, HOXC9 versus HOXC10 in UCS, with a Pearson correlation of 0.89.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (HOXC9→partner) and Y-score (partner→HOXC9) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCS	HOXC10 →	+4.158	+3.266	<.001	<.001	3	33
UCS	HOXC8 →	+2.214	+2.769	<.001	<.001	3	33
UCS	HOXC6 →	+2.562	+2.787	<.001	<.001	3	32
UCS	HOXC-AS1 →	+2.537	+3.453	<.001	<.001	3	32
SCLC	HOXC4 →	+2.108	+2.652	<.001	<.001	3	29
UCS	HOXC11 →	+2.885	+2.842	<.001	<.001	3	29

Each partner links to its Q-omics profile. Showing the 6 strongest of 13,306 associations by consensus.

HOXC9 vs HOXC10 — UCS

Explore this scatter interactively →