HDAC9

Across TCGA cell cohorts, HDAC9 RNA expression is significantly associated with the RNA expression of many other genes, with 9,925 significant associations in total. BREAST shows the largest number of these associations.

The most reproducible HDAC9-associated genes across cancer lineages are PDP1, SLFN5, and TRIM22. Each is linked with HDAC9 in more than 9 cancer types. Because this analysis shows association rather than direction, both HDAC9-to-partner and partner-to-HDAC9 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, HDAC9 versus PDP1 in SOFT_TISSUE, with a Pearson correlation of 0.55.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (HDAC9→partner) and Y-score (partner→HDAC9) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SOFT_TISSUE	PDP1 →	+1.659	+1.738	<.001	<.001	3	10
SOFT_TISSUE	SLFN5 →	+2.075	+2.018	<.001	<.001	3	8
SOFT_TISSUE	TRIM22 →	+2.753	+1.509	<.001	<.001	3	8
URINARY_TRACT	RELB →	+1.415	+1.815	<.001	<.001	3	7
BREAST	C1GALT1 →	+1.139	+1.441	<.001	<.001	2	8
BLOOD_Leukemia	SERPINB8 →	+1.493	+1.449	<.001	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,925 associations by consensus.

HDAC9 vs PDP1 — SOFT_TISSUE

Explore this scatter interactively →