H1-7

RNA — tumor vs normal
Tumor vs NormalRNABox plot · TCGA cohorts

Across TCGA pan-cancer cohorts, H1-7 RNA differs between tumor and matched normal tissue in 14 of 18 cancer types tested, making tumor–normal expression one of H1-7’s most consistent transcriptional readouts.

The strongest signal is observed in lung adenocarcinoma (LUAD), where H1-7 RNA is repressed in tumor relative to normal tissue. In most cancer types H1-7 is over-expressed in tumor, although a few such as LUAD and KIRP show the opposite, repressed pattern.

LUAD, KIRP, and BLCA are the cancer types where H1-7 tumor–normal differential expression is most reproducible.

RNA tumor vs normal associations by lineage

Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in H1-7 RNA (log2); positive values indicate higher expression in tumor. p-values are from the differential-expression test.
LineageGenderStageFold-changepSampling consensus
LUADFemaleII,III,IV−0.285<.0019view →
KIRPAllII,III,IV−0.110<.0019view →
BLCAMaleIII,IV−0.168.0118view →
UCECAllAll−0.213<.0016view →
LUSCMaleII,III,IV−0.178<.0016view →
KICHAllAll−0.101<.0016view →
BRCAAllAll−0.088<.0016view →
KIRCMaleAll−0.046.0016view →
HNSCAllII,III,IV+0.080.0215view →
COADAllII,III,IV−0.050.0015view →
LIHCAllAll+0.128.0143view →
READAllII,III,IV−0.125.0392view →
Pink = over-expressed in tumor, green = repressed in tumor. Showing the 12 strongest of 14 lineages.

Exploration