GTF3C2-AS1

Across TCGA patient cohorts, GTF3C2-AS1 RNA expression is significantly associated with the protein abundance of many other proteins, with 13,674 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible GTF3C2-AS1-associated proteins across cancer lineages are SF3B3, HNRNPLL, and GTF3C1. Each is linked with GTF3C2-AS1 in more than 5 cancer types. Because this analysis shows association rather than direction, both GTF3C2-AS1-to-partner and partner-to-GTF3C2-AS1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, GTF3C2-AS1 versus SF3B3 in GBM, with a Pearson correlation of 0.42.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (GTF3C2-AS1→partner) and Y-score (partner→GTF3C2-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	SF3B3 →	+0.297	+0.286	<.001	<.001	3	6
GBM	HNRNPLL →	+0.281	+0.362	<.001	<.001	3	6
LSCC	GTF3C1 →	+0.201	+0.250	<.001	<.001	3	5
LSCC	UTP15 →	+0.278	+0.282	<.001	<.001	3	4
LSCC	WDR43 →	+0.324	+0.272	<.001	<.001	3	4
LSCC	BPTF →	+0.227	+0.251	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 13,674 associations by consensus.

GTF3C2-AS1 vs SF3B3 — GBM

Explore this scatter interactively →