GPC5-IT1

associated omics data
GPC5 intronic transcript 1Genealiases: []

Q-omics provides the consensus-scored GPC5-IT1 profile across patient tissues and cancer cell-line models. GPC5-IT1 expression is associated with patient survival in 12 of 34 cancer types, with the highest sampling consensus in THYM. Among the 18 cancer types available for tumor–normal comparison, GPC5-IT1 is differentially expressed in 6, with the highest sampling consensus in KIRC. Additionally, GPC5-IT1 RNA expression shows 6,627 significant protein co-abundance associations, with the highest sampling consensus in GBM. Together, these results highlight THYM, KIRC, and GBM as cancer lineages where GPC5-IT1 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes GPC5-IT1 survival associations across molecular data types. GPC5-IT1 RNA expression shows survival associations in the most cancer types (12). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
GPC5-IT1 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier12THYM (72)view →
This table ranks reproducible GPC5-IT1 RNA expression–survival associations across cancer types. High GPC5-IT1 expression shows unfavorable associations in THYM, GBM, LGG, UCEC and BLCA, but favorable associations in HNSC. The THYM Kaplan–Meier curve shows clear separation, with the high-expression group declining faster, consistent with the unfavorable association (log-rank p < 0.001). Together, the overview and detailed table identify THYM as the clearest survival context for GPC5-IT1 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
THYMOSTertileAll0.1860.880<.00172view →
HNSCOSTertileII,III,IV0.7990.335.00854view →
GBMDFSMedianAll0.1740.314<.00142view →
LGGDFSTertileAll0.7420.868<.00141view →
UCECDFSTertileAll0.7500.902.00536view →
BLCADFSTertileAll0.3460.636.00121view →
Pink = unfavorable, green = favorable. all 12 lineages →

GPC5-IT1-THYM (OS)

Kaplan–Meier survival curve for GPC5-IT1 RNA expression in THYM: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes GPC5-IT1 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 6. The strongest signals are observed in KIRC for RNA.
GPC5-IT1 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot6KIRC (12)view →
This table ranks reproducible tumor–normal expression differences for GPC5-IT1. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. GPC5-IT1 shows lower tumor expression in KIRC, KICH, KIRP, LUSC and THCA and higher tumor expression in LIHC. The KIRC box plot shows higher GPC5-IT1 RNA expression in normal versus tumor tissue (log2 FC = −0.245, t-test p < 0.001).
LineageGenderStageFold-changepSampling consensus
KIRCFemaleAll−0.245<.00112view →
KICHAllII,III,IV−0.231<.00110view →
KIRPAllAll−0.170<.0017view →
LUSCMaleAll−0.061.0032view →
LIHCAllAll+0.031.0281view →
THCAAllAll−0.028.0401view →
Green = repressed in tumor. all 6 lineages →

GPC5-IT1-KIRC

Tumor-vs-normal expression box plot for GPC5-IT1 in KIRC.

Explore this plot interactively →

Cross-omics associations

This table shows molecular features associated with GPC5-IT1 in patient tissues and cancer cell lines. In patient samples, GPC5-IT1 shows the broadest associations at the RNA and protein expression levels, with GBM recurring as the lineage with the largest associated feature set.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
Protein (mass-spec)6,627GBM (2769)view →
Function (RNA)5,546STAD (3782)view →