FES

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, FES mutation is significantly associated with the RNA expression of many other genes, with 3,136 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible FES-associated genes across cancer lineages are CHAC2, RBBP4, and HIRA. Each is linked with FES in more than 2 cancer types. Because this analysis shows association rather than direction, both FES-to-partner and partner-to-FES results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, CHAC2 grouped by FES-low versus FES-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (FES→partner) and Y-score (partner→FES) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
SKCMCHAC2 →+0.673+3.591.005.00133
SKCMRBBP4 →+0.594+3.341.004.00533
UCECHIRA →+0.361+2.839.008.00133
UCECNCAPG →+0.586+2.708.008.00333
UCECMRPL37 →+0.491+2.807<.001<.00133
UCECSDHB →+0.462+2.807<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest of 3,136 associations by consensus.

CHAC2 by FES expression — SKCM

Box plot of CHAC2 in FES-low vs FES-high samples in SKCM.

Explore this box plot interactively →

Exploration