F9

Across TCGA cell cohorts, F9 RNA expression is significantly associated with the mutation status of many other genes, with 174 significant associations in total. BLOOD_Lymphoma shows the largest number of these associations.

The most reproducible F9-associated genes across cancer lineages are TRPM7, SETBP1, and FAM47A. Each is linked with F9 in more than 1 cancer types. Because this analysis shows association rather than direction, both F9-to-partner and partner-to-F9 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, TRPM7 grouped by F9-low versus F9-high in CNS.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (F9→partner) and Y-score (partner→F9) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CNS	TRPM7 →	+5.321	+0.042	.005	<.001	3	2
BLOOD_Lymphoma	SETBP1 →	+3.523	+0.028	.009	<.001	3	2
LUNG_SCLC	FAM47A →	+4.643	+0.027	.004	<.001	3	2
LUNG_SCLC	HNF1A →	+4.643	+0.027	.004	<.001	3	2
CNS	SLC22A4 →	+4.321	+0.016	.009	.002	3	2
CNS	NCOA1 →	+4.321	+0.021	.009	<.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 174 associations by consensus.

TRPM7 by F9 expression — CNS

Explore this box plot interactively →