CPS1-IT1

RNA expression — cross-omics
Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, CPS1-IT1 RNA expression is significantly associated with the RNA expression of many other genes, with 7,253 significant associations in total. ESCA shows the largest number of these associations.

The most reproducible CPS1-IT1-associated genes across cancer lineages are CPS1, RNU6-859P, and RN7SKP246. Each is linked with CPS1-IT1 in more than 8 cancer types. Because this analysis shows association rather than direction, both CPS1-IT1-to-partner and partner-to-CPS1-IT1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CPS1-IT1 versus CPS1 in LUAD, with a Pearson correlation of 0.63.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CPS1-IT1→partner) and Y-score (partner→CPS1-IT1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADCPS1 →+6.003+0.172<.001<.00139
DLBCRNU6-859P →+1.197+0.086<.001<.00139
COADRN7SKP246 →+0.557+0.270<.001<.00139
COADSNORA30B →+0.529+0.066<.001.00639
COADRNU6-396P →+0.728+0.094<.001<.00139
UCECEDDM3CP →+0.739+0.079<.001<.00139
Each partner links to its Q-omics profile. Showing the 6 strongest of 7,253 associations by consensus.

CPS1-IT1 vs CPS1 — LUAD

Per-sample scatter of CPS1-IT1 vs CPS1 in LUAD (Pearson r = 0.63).

Explore this scatter interactively →

Exploration