CPM

Across TCGA patient cohorts, CPM RNA expression is significantly associated with the protein abundance of many other proteins, with 17,034 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible CPM-associated proteins across cancer lineages are RSU1, SRRT, and MSN. Each is linked with CPM in more than 5 cancer types. Because this analysis shows association rather than direction, both CPM-to-partner and partner-to-CPM results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CPM versus RSU1 in COAD, with a Pearson correlation of 0.36.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (CPM→partner) and Y-score (partner→CPM) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	RSU1 →	+0.329	+0.533	<.001	<.001	3	6
GBM	SRRT →	-0.330	-1.143	<.001	<.001	3	6
COAD	MSN →	+0.346	+0.777	.003	<.001	3	6
BRCA	TNS2_S102 →	+0.682	+0.604	<.001	<.001	3	6
OV	SF3A1 →	-0.207	-1.373	<.001	<.001	3	5
LSCC	SMARCA5 →	-0.330	-0.966	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 17,034 associations by consensus.

CPM vs RSU1 — COAD

Explore this scatter interactively →