CNTNAP3P2

Across TCGA patient cohorts, CNTNAP3P2 mutation is significantly associated with the RNA expression of many other genes, with 39 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible CNTNAP3P2-associated genes across cancer lineages are OR4A14P, IGHVII-1-1, and CAPZA1P3. Each is linked with CNTNAP3P2 in more than 1 cancer types. Because this analysis shows association rather than direction, both CNTNAP3P2-to-partner and partner-to-CNTNAP3P2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, OR4A14P grouped by CNTNAP3P2-low versus CNTNAP3P2-high in LIHC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CNTNAP3P2→partner) and Y-score (partner→CNTNAP3P2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LIHC	OR4A14P →	+0.068	+6.149	<.001	.002	3	2
BLCA	IGHVII-1-1 →	+0.179	+7.640	<.001	.009	3	1
LIHC	CAPZA1P3 →	+0.062	+5.355	<.001	.005	3	1
LIHC	OR7E148P →	+0.066	+5.108	<.001	.008	3	1
LIHC	MTCO3P31 →	+0.077	+5.033	<.001	.009	3	1
LIHC	SNRPEP10 →	+0.213	+5.108	<.001	.008	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 39 associations by consensus.

OR4A14P by CNTNAP3P2 expression — LIHC

Explore this box plot interactively →