CCDC144NL-AS1

Across TCGA patient cohorts, CCDC144NL-AS1 mutation is significantly associated with the RNA expression of many other genes, with 607 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible CCDC144NL-AS1-associated genes across cancer lineages are NAP1L4, TDGF1P1, and DDX3P3. Each is linked with CCDC144NL-AS1 in more than 1 cancer types. Because this analysis shows association rather than direction, both CCDC144NL-AS1-to-partner and partner-to-CCDC144NL-AS1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, NAP1L4 grouped by CCDC144NL-AS1-low versus CCDC144NL-AS1-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CCDC144NL-AS1→partner) and Y-score (partner→CCDC144NL-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	NAP1L4 →	+0.462	+3.343	.003	.005	3	2
UCEC	TDGF1P1 →	+0.136	+3.613	<.001	<.001	3	2
UCEC	DDX3P3 →	+0.134	+2.602	<.001	.008	3	2
UCEC	MIR3661 →	+1.079	+2.894	<.001	.001	3	2
SKCM	FHL2 →	+1.214	+3.341	.002	.005	3	1
SKCM	ITPRIP →	+1.327	+3.328	<.001	.005	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 607 associations by consensus.

NAP1L4 by CCDC144NL-AS1 expression — UCEC

Explore this box plot interactively →