B3GNT3

Across TCGA patient cohorts, B3GNT3 mutation is significantly associated with the RNA expression of many other genes, with 452 significant associations in total. SKCM shows the largest number of these associations.

The most reproducible B3GNT3-associated genes across cancer lineages are LONRF2P1, COPS8P1, and SNORD31B. Each is linked with B3GNT3 in more than 1 cancer types. Because this analysis shows association rather than direction, both B3GNT3-to-partner and partner-to-B3GNT3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LONRF2P1 grouped by B3GNT3-low versus B3GNT3-high in CESC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (B3GNT3→partner) and Y-score (partner→B3GNT3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CESC	LONRF2P1 →	+0.096	+5.812	<.001	.003	3	2
LUAD	COPS8P1 →	+0.127	+5.481	<.001	.005	3	2
LUAD	SNORD31B →	+0.784	+5.712	<.001	.003	3	2
UCEC	GABRE →	-0.883	-3.584	.004	.003	3	2
SKCM	RNA5SP531 →	+0.063	+4.141	<.001	.004	3	2
UCEC	UBXN6 →	+0.424	+3.217	.008	.009	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 452 associations by consensus.

LONRF2P1 by B3GNT3 expression — CESC

Explore this box plot interactively →