Positive regulation of chromosome condensation

Across TCGA patient cohorts, RNA activity of the Positive regulation of chromosome condensation pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SGO1, ESCO2, and HMMR, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Positive regulation of chromosome condensation activity versus SGO1 in OV (Pearson r = 0.52).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	SGO1 →	+1.003	+0.786	<.001	<.001	3	10
GBM	ESCO2 →	+1.327	+1.014	<.001	<.001	3	10
OV	HMMR →	+1.127	+0.647	<.001	<.001	3	10
OV	CDKN3 →	+1.100	+0.510	<.001	.002	3	9
GBM	CENPI →	+1.279	+0.734	<.001	<.001	3	9
GBM	TTK →	+1.371	+0.784	<.001	<.001	3	9

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1905821 vs SGO1 — OV

Explore this scatter interactively →