Regulation of protein polyubiquitination

Across TCGA patient cohorts, RNA activity of the Regulation of protein polyubiquitination pathway is significantly associated with the RNA expression of multiple genes, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are AGAP12P, GFOD2, and SMARCC1, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of protein polyubiquitination activity versus AGAP12P in CCRCC (Pearson r = -0.31).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CCRCC	AGAP12P →	-0.771	-0.470	.004	.009	3	4
OV	GFOD2 →	-0.541	-0.627	<.001	.009	3	4
GBM	SMARCC1 →	-0.410	-0.247	<.001	.006	2	5
UCEC	DMAP1 →	-0.349	-0.481	.001	<.001	3	4
BRCA	IDUA →	-0.714	-0.519	.001	.002	3	3
CCRCC	TRMT10B →	-0.257	-0.495	.004	.006	2	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1902914 vs AGAP12P — CCRCC

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