Negative regulation of cellular response to vascular endothelial growth factor stimulus

Across TCGA patient cohorts, RNA activity of the Negative regulation of cellular response to vascular endothelial growth factor stimulus pathway is significantly associated with the RNA expression of multiple genes, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NUF2, SUGCT, and PEG3, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of cellular response to vascular endothelial growth factor stimulus activity versus NUF2 in LSCC (Pearson r = -0.24).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	NUF2 →	-0.967	-0.760	<.001	<.001	3	4
LSCC	SUGCT →	+0.722	+0.620	.001	.004	3	4
OV	PEG3 →	+0.944	+0.135	.001	.003	3	4
GBM	WLS →	+0.524	+0.310	.003	.002	3	4
GBM	HPRT1 →	-0.453	-0.400	.001	<.001	3	4
UCEC	RN7SL546P →	+1.339	+0.966	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1902548 vs NUF2 — LSCC

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