Regulation of cellular response to vascular endothelial growth factor stimulus

Across TCGA cell cohorts, RNA activity of the Regulation of cellular response to vascular endothelial growth factor stimulus pathway is significantly associated with the RNA expression of multiple genes, with the BONE cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are NKPD1, ZNF224, and ARVCF, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of cellular response to vascular endothelial growth factor stimulus activity versus NKPD1 in BONE (Pearson r = -0.68).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BONE	NKPD1 →	-0.460	-0.367	<.001	.007	3	5
SOFT_TISSUE	ZNF224 →	-0.994	-0.371	.004	.002	3	4
OESOPHAGUS	ARVCF →	-1.842	-0.298	.001	<.001	3	4
UPPER_AERODIGESTIVE_TRACT	KCNK5 →	-1.436	-0.269	.003	.007	3	4
OESOPHAGUS	SAMD12 →	-1.987	-0.270	<.001	<.001	3	4
LUNG_NSCLC_LUAD	DENND1C →	-1.589	-0.154	.002	.009	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1902547 vs NKPD1 — BONE

Explore this scatter interactively →