Negative regulation of RNA catabolic process

Across TCGA patient cohorts, RNA activity of the Negative regulation of RNA catabolic process pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are RASGRF2, DKC1, and PLXNC1, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of RNA catabolic process activity versus RASGRF2 in OV (Pearson r = -0.40).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	RASGRF2 →	-0.803	-0.197	<.001	.003	3	7
BRCA	DKC1 →	+0.383	+0.131	.006	.005	3	7
LUAD	PLXNC1 →	-0.527	-0.169	<.001	.001	3	6
LUAD	PPFIA2 →	-0.655	-0.229	<.001	<.001	3	6
HNSC	ZEB1 →	-1.068	-0.245	<.001	.003	3	6
CCRCC	PTH1R →	-0.903	-0.104	.005	.009	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1902369 vs RASGRF2 — OV

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