Obsolete positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

pathway activity — cross-omics
GO:1901522Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are HDGFL3, SPON1, and LRCH4_S506, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMHDGFL3 →+0.411+0.051.001.00536
GBMSPON1 →+0.545+0.045.002<.00135
OVLRCH4_S506 →-0.489-0.056.008.00135
CCRCCVCAN_S1349 →+1.164+0.070<.001<.00126
LSCCDDAH2 →+0.382+0.064<.001<.00135
CCRCCOLFML3 →+0.770+0.048<.001<.00135
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration