Obsolete positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

pathway activity — cross-omics
GO:1901522Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus pathway is significantly associated with the RNA expression of multiple genes, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LINC00265, SRRM5, and CATSPER2P1, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
COADLINC00265 →+0.597+0.646.005.00335
HNSCSRRM5 →+0.462+0.538.002<.00135
UCECCATSPER2P1 →+0.403+0.548.004.00435
BRCATTC31 →+0.393+0.475.001.00335
BRCASUPT7L →+0.281+0.373<.001<.00135
LSCCCCDC93 →+0.231+0.502.002.00435
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

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