Obsolete regulation of transforming growth factor beta activation

pathway activity — cross-omics
GO:1901388Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete regulation of transforming growth factor beta activation pathway is significantly associated with the protein abundance of multiple proteins, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are FLNA_S2152, ITGAV, and TIMP2, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVFLNA_S2152 →+0.874+0.092<.001<.00138
HNSCITGAV →+0.609+0.115<.001<.00137
BRCATIMP2 →+0.850+0.080<.001<.00137
CCRCCACTN1 →+0.492+0.101<.001<.00137
LSCCCCDC86 →-0.347-0.067<.001<.00137
LSCCLARP1 →-0.260-0.075<.001<.00137
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration