Regulation of hyaluronan biosynthetic process

Across TCGA patient cohorts, RNA activity of the Regulation of hyaluronan biosynthetic process pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are REPS2, ARHGAP44, and SMPD3, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of hyaluronan biosynthetic process activity versus REPS2 in GBM (Pearson r = 0.22).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	REPS2 →	+0.768	+0.658	.001	.004	3	4
GBM	ARHGAP44 →	+0.551	+0.795	.001	<.001	3	4
PDAC	SMPD3 →	+1.103	+0.786	<.001	<.001	3	4
PDAC	IDNK →	+0.288	+0.575	<.001	.001	3	4
UCEC	YEATS2 →	-0.552	-0.227	<.001	.009	3	4
LUAD	USP21P1 →	+0.061	+0.623	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1900125 vs REPS2 — GBM

Explore this scatter interactively →