Olefinic compound biosynthetic process

Across TCGA patient cohorts, RNA activity of the Olefinic compound biosynthetic process pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LMNB1, DAB2, and PBK, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Olefinic compound biosynthetic process activity versus LMNB1 in HNSC (Pearson r = -0.27).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	LMNB1 →	-0.683	-0.525	.006	.006	3	7
GBM	DAB2 →	+0.922	+0.777	<.001	<.001	3	7
BRCA	PBK →	-1.071	-0.759	.001	<.001	3	6
BRCA	MYBL2 →	-1.521	-0.872	<.001	<.001	3	6
BRCA	CDCA3 →	-0.982	-0.740	<.001	<.001	3	6
BRCA	TICRR →	-0.770	-0.724	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0120255 vs LMNB1 — HNSC

Explore this scatter interactively →