Protein maturation by [4Fe-4S] cluster transfer

pathway activity — cross-omics
GO:0106035Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Protein maturation by [4Fe-4S] cluster transfer pathway is significantly associated with the protein abundance of multiple proteins, with the LSCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are SUPT16H, VRK1, and BOLA3, each associated with the pathway in up to 7 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCSUPT16H →+0.410+0.070<.001<.00137
LSCCVRK1 →+0.415+0.040.002.00337
LSCCBOLA3 →+0.438+0.058<.001<.00137
LSCCAHSA1 →+0.278+0.052<.001<.00137
BRCALRPPRC →+0.452+0.025<.001.00737
LSCCNAT10 →+0.437+0.069<.001<.00137
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration