Cellular lipid biosynthetic process

pathway activity — cross-omics
GO:0097384Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Cellular lipid biosynthetic process pathway is significantly associated with the RNA expression of multiple genes, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are PLA2G4A, EIF5AP4, and RPL23AP71, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADPLA2G4A →+1.935+0.264<.001<.00135
LUADEIF5AP4 →+0.321+0.201<.001<.00134
LUADRPL23AP71 →+0.175+0.141<.001.00134
UCECARSJ →+1.192+0.258<.001.00134
COADSLC13A2 →-1.172-0.238.003<.00134
BRCAACTG1P23 →+1.149+0.588<.001<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration