Regulation of synapse maturation

Across TCGA patient cohorts, RNA activity of the Regulation of synapse maturation pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are HSPD1P1, PIMREG, and RPL12P31, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of synapse maturation activity versus HSPD1P1 in BRCA (Pearson r = 0.24).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	HSPD1P1 →	+0.896	+0.598	.002	.001	3	5
LUAD	PIMREG →	+0.895	+0.533	<.001	.003	3	4
CCRCC	RPL12P31 →	+0.368	+0.718	.002	<.001	3	4
GBM	STMN1 →	+0.696	+0.618	<.001	<.001	3	4
LSCC	ARPC5L →	+0.416	+0.706	<.001	<.001	3	4
BRCA	CACYBPP2 →	+0.916	+0.676	.004	.002	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0090128 vs HSPD1P1 — BRCA

Explore this scatter interactively →