Receptor-mediated endocytosis involved in cholesterol transport

pathway activity — cross-omics
GO:0090118Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Receptor-mediated endocytosis involved in cholesterol transport pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are AK1, ACOX1, and EIF3H_S183, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMAK1 →+0.325+0.077.001.00135
PDACACOX1 →-0.299-0.034.001.00734
PDACEIF3H_S183 →-0.321-0.051.006<.00134
PDACLDLRAP1 →+0.192+0.037.008<.00134
BRCAPLEKHA5_S607 →-0.646-0.075<.001<.00134
CCRCCSLC2A4_S488 →-0.505-0.045.002.00534
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration