Embryonic skeletal joint development

Across TCGA cell cohorts, RNA activity of the Embryonic skeletal joint development pathway is significantly associated with the drug response of multiple features, with the BREAST cohort showing a particularly strong set of associations.

The most reproducible pathway-associated features across cancer lineages are Etoposide, JNK-9L, and POMHEX, each associated with the pathway in up to 1 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, Etoposide grouped by Embryonic skeletal joint development-low versus -high activity in BREAST.

Pathway-associated features by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner feature	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BREAST	Etoposide →	+1.493	+0.177	.018	.038	2	1
BREAST	JNK-9L →	+0.333	+0.177	.001	.038	2	1
BREAST	POMHEX →	+0.408	+0.177	.002	.038	2	1
BREAST	ARRY-520 →	+2.105	+0.177	.006	.038	2	1
BONE	OSI-027 →	+0.990	+0.169	.019	.032	2	1
BREAST	Vinblastine →	+1.258	+0.177	.028	.038	1	1

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Etoposide by Embryonic skeletal joint development activity — BREAST

Explore this box plot interactively →