Mesenchymal cell differentiation involved in kidney development

Across TCGA patient cohorts, RNA activity of the Mesenchymal cell differentiation involved in kidney development pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SRGN, BATF2, and OAS3, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Mesenchymal cell differentiation involved in kidney development activity versus SRGN in BRCA (Pearson r = 0.22).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	SRGN →	+0.889	+0.709	<.001	.002	3	4
BRCA	BATF2 →	+1.397	+0.692	<.001	.003	3	4
UCEC	OAS3 →	+0.601	+0.417	.001	.001	3	4
UCEC	RPP40 →	+0.634	+0.467	.002	.005	3	4
UCEC	RTP4 →	+1.009	+0.364	<.001	.008	3	4
UCEC	LINC00239 →	+0.643	+0.574	.002	.005	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0072161 vs SRGN — BRCA

Explore this scatter interactively →