Positive regulation of transforming growth factor beta production

Across TCGA patient cohorts, RNA activity of the Positive regulation of transforming growth factor beta production pathway is significantly associated with the RNA expression of multiple genes, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are SEC63, PRRC2C, and LATS1, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Positive regulation of transforming growth factor beta production activity versus SEC63 in CCRCC (Pearson r = 0.20).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CCRCC	SEC63 →	+0.351	+0.262	.001	<.001	3	5
CCRCC	PRRC2C →	+0.338	+0.211	.001	<.001	3	4
GBM	LATS1 →	+0.353	+0.110	<.001	.002	3	4
GBM	PPHLN1 →	+0.248	+0.129	<.001	<.001	3	4
GBM	IREB2 →	+0.319	+0.137	<.001	<.001	3	4
OV	ANGPTL2 →	+1.104	+0.161	.001	.002	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0071636 vs SEC63 — CCRCC

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