Cellular response to antibiotic

Across TCGA patient cohorts, RNA activity of the Cellular response to antibiotic pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CPE, HMGN2P18, and CFP, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Cellular response to antibiotic activity versus CPE in BRCA (Pearson r = -0.17).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	CPE →	-1.215	-0.631	<.001	.002	3	4
OV	HMGN2P18 →	+0.479	+0.735	.002	.002	3	3
PDAC	CFP →	+0.092	+0.457	.007	.004	3	3
PDAC	BTF3L4P1 →	+0.549	+0.774	.001	<.001	3	3
LUAD	DLGAP1-AS1 →	-0.581	-0.160	<.001	<.001	3	3
BRCA	TNFRSF11B →	-0.850	-0.675	.004	.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0071236 vs CPE — BRCA

Explore this scatter interactively →