Positive regulation of tooth mineralization

Across TCGA cell cohorts, RNA activity of the Positive regulation of tooth mineralization pathway is significantly associated with the shRNA dependency of multiple genes, with the BREAST cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are KLK2, TYMS, and KCNB1, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The box plot shows the strongest association, KLK2 grouped by Positive regulation of tooth mineralization-low versus -high activity in BREAST.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BREAST	KLK2 →	-0.272	-1.448	<.001	<.001	3	3
BREAST	TYMS →	+0.762	+1.305	<.001	<.001	3	2
SKIN	KCNB1 →	+0.240	+1.437	.006	.007	3	2
SKIN	SCN4B →	+0.164	+1.564	.008	<.001	3	2
SKIN	ZNF239 →	-0.281	-1.307	<.001	.004	3	2
BREAST	FZR1 →	-0.336	-1.182	.006	.007	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

KLK2 by Positive regulation of tooth mineralization activity — BREAST

Explore this box plot interactively →