Obsolete positive regulation of transcription from RNA polymerase II promoter in response to hypoxia

pathway activity — cross-omics
GO:0061419Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Obsolete positive regulation of transcription from RNA polymerase II promoter in response to hypoxia pathway is significantly associated with the RNA expression of multiple genes, with the HNSC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TP53, MTA2, and PTTG1, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCTP53 →+0.814+0.631<.001<.00134
LSCCMTA2 →+0.278+0.565.003.00334
LUADPTTG1 →+0.759+0.633<.001<.00134
BRCANUP85 →+0.462+0.974<.001<.00134
LUADKIF2C →+0.865+0.624<.001<.00134
HNSCRFC4 →+0.823+0.617<.001<.00125
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration