Negative regulation of cartilage development

Across TCGA patient cohorts, RNA activity of the Negative regulation of cartilage development pathway is significantly associated with the protein abundance of multiple proteins, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are CNN2, CRTAP, and DAPK3, each associated with the pathway in up to 10 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of cartilage development activity versus CNN2 in OV (Pearson r = 0.68).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	CNN2 →	+0.931	+0.081	<.001	<.001	3	10
GBM	CRTAP →	+0.635	+0.084	<.001	<.001	3	10
UCEC	DAPK3 →	+0.667	+0.074	<.001	<.001	3	10
CCRCC	MMP14 →	+0.570	+0.065	<.001	<.001	3	10
OV	MRC2 →	+0.712	+0.072	<.001	<.001	3	10
GBM	P3H1 →	+0.611	+0.060	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0061037 vs CNN2 — OV

Explore this scatter interactively →