Cardiac cell fate commitment

pathway activity — cross-omics
GO:0060911Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Cardiac cell fate commitment pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are TBX3, NOL10, and NOVA1, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCATBX3 →+1.073+0.581<.001<.00134
LSCCNOL10 →+0.408+0.315.002.00933
BRCANOVA1 →+1.040+0.490.008.00333
LSCCRPL23AP80 →+0.088+0.636.009<.00133
CCRCCJTBP1 →+0.324+0.601.003.00233
CCRCCDGCR11 →+0.419+0.920<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration