Cell fate commitment involved in formation of primary germ layer

Across TCGA cell cohorts, RNA activity of the Cell fate commitment involved in formation of primary germ layer pathway is significantly associated with the RNA expression of multiple genes, with the BREAST cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are HNRNPA1, FLVCR1, and ILF2, each associated with the pathway in up to 9 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Cell fate commitment involved in formation of primary germ layer activity versus HNRNPA1 in BREAST (Pearson r = 0.47).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BREAST	HNRNPA1 →	+0.645	+1.084	<.001	<.001	3	9
BONE	FLVCR1 →	+0.795	+1.724	.005	<.001	3	9
BREAST	ILF2 →	+0.746	+0.888	.002	.003	3	8
BLOOD_Leukemia	TADA1 →	+0.632	+1.126	<.001	<.001	3	8
PANCREAS	TAF5 →	+0.812	+1.228	.002	.001	3	8
BLOOD_Leukemia	PRR3 →	+0.907	+1.195	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0060795 vs HNRNPA1 — BREAST

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