Positive regulation of inositol phosphate biosynthetic process

Across TCGA patient cohorts, RNA activity of the Positive regulation of inositol phosphate biosynthetic process pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are HRH1, MIR4689, and SLC1A2, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Positive regulation of inositol phosphate biosynthetic process activity versus HRH1 in GBM (Pearson r = 0.03).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	HRH1 →	+0.633	+0.981	.005	<.001	3	5
BRCA	MIR4689 →	-0.313	-0.699	.004	.005	3	3
GBM	SLC1A2 →	+1.590	+1.061	<.001	<.001	3	3
CCRCC	LINC02250 →	+0.302	+0.373	.002	<.001	3	3
CCRCC	RPL27P12 →	-0.358	-0.349	.003	.001	3	3
CCRCC	LINC01443 →	+0.522	+0.317	.002	.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0060732 vs HRH1 — GBM

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