Positive regulation of response to type II interferon

pathway activity — cross-omics
GO:0060332Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Positive regulation of response to type II interferon pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are IGLV2-23, MARK2P13, and STPG2-AS1, each associated with the pathway in up to 3 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVIGLV2-23 →-3.015-0.780.001.00133
COADMARK2P13 →-0.011-0.873.007.00233
CCRCCSTPG2-AS1 →-0.405-0.501.002.00433
LUADPOLR3B →+0.409+0.492<.001.00633
LUADCOL24A1 →-0.768-0.569<.001<.00133
LUADMAP3K5 →-0.523-0.495<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration