Primitive erythrocyte differentiation

pathway activity — cross-omics
GO:0060319Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Primitive erythrocyte differentiation pathway is significantly associated with the RNA expression of multiple genes, with the CCRCC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are RNF7, APCDD1, and AMOTL1, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
CCRCCRNF7 →-0.223-0.837.007.00834
LUADAPCDD1 →-0.401-0.326.003.00833
LUADAMOTL1 →-0.420-0.425.002.00133
UCECRNA5SP360 →+0.394+0.600.004<.00133
COADLINC00323 →+0.272+0.301<.001<.00133
CCRCCMS4A15 →-0.040-0.783.009.00132
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration