Thyroid-stimulating hormone-secreting cell differentiation

pathway activity — cross-omics
GO:0060129Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Thyroid-stimulating hormone-secreting cell differentiation pathway is significantly associated with the RNA expression of multiple genes, with the LUAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are LRRK2-DT, IQSEC3, and CD40, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADLRRK2-DT →+1.177+0.299.001<.00133
UCECIQSEC3 →+0.378+0.280<.001.00233
LSCCCD40 →+0.626+0.184.002.00223
LSCCLRP1 →+0.417+0.113.003.00732
LSCCSLC16A2 →+0.537+0.168.003.00132
LSCCZRSR2 →+0.272+0.132.005.00132
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration