Positive regulation of nitric-oxide synthase biosynthetic process

pathway activity — cross-omics
GO:0051770Cross-omicsSHRNA → SHRNACellPairwise association · TCGA cohorts

Across TCGA cell cohorts, RNA activity of the Positive regulation of nitric-oxide synthase biosynthetic process pathway is significantly associated with the shRNA dependency of multiple genes, with the URINARY_TRACT cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CCL2, AKAP12, and BDP1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
URINARY_TRACTCCL2 →-0.417-1.841.001<.00136
LIVERAKAP12 →-0.345-1.257.006.00435
PANCREASBDP1 →-0.358-1.016.003<.00135
LUNG_NSCLC_LUADMAP2K3 →-0.215-0.856.005.00234
STOMACHUBASH3A →-0.275-1.295.002.00434
UPPER_AERODIGESTIVE_TRACTLATS1 →+0.298+1.268.003.00234
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration