Negative regulation of actin nucleation

Across TCGA patient cohorts, RNA activity of the Negative regulation of actin nucleation pathway is significantly associated with the RNA expression of multiple genes, with the UCEC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are COBL, CRACDL, and NPL, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of actin nucleation activity versus COBL in UCEC (Pearson r = 0.30).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	COBL →	+0.888	+0.184	.004	.003	3	4
LSCC	CRACDL →	+0.837	+0.167	<.001	<.001	3	4
CCRCC	NPL →	-0.642	-0.127	<.001	<.001	3	4
CCRCC	PRKAB1 →	+0.510	+0.148	.005	.007	3	4
CCRCC	PRR15L →	+1.151	+0.104	<.001	.003	3	4
COAD	LINC01234 →	-0.640	-0.114	.001	.005	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:0051126 vs COBL — UCEC

Explore this scatter interactively →