Regulation of DNA ligation

pathway activity — cross-omics
GO:0051105Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNA activity of the Regulation of DNA ligation pathway is significantly associated with the protein abundance of multiple proteins, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are MCM4, MKI67, and RFC2, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile.

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVMCM4 →+0.685+0.050<.001<.00138
COADMKI67 →+0.541+0.036<.001.00238
OVRFC2 →+0.351+0.037<.001.00438
UCECSMC2 →+0.520+0.069<.001.00338
OVRRM2 →+0.687+0.058.001<.00138
UCECSMC4 →+0.487+0.068<.001.00238
Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

Exploration